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WIP patch:
diff --git a/packages/core/python/itkwasm/itkwasm/pipeline.py b/packages/core/python/itkwasm/itkwasm/pipeline.py index 1424b68b..417a31a0 100644 --- a/packages/core/python/itkwasm/itkwasm/pipeline.py +++ b/packages/core/python/itkwasm/itkwasm/pipeline.py @@ -345,7 +345,7 @@ class Pipeline: if mesh.numberOfPoints > 0: data_ptr = ri.get_output_array_address(0, index, 0) data_size = ri.get_output_array_size(0, index, 0) - mesh.points = _to_numpy_array(mesh.meshType.pointComponentType, ri.wasmtime_lift(data_ptr, data_size)) + mesh.points = _to_numpy_array(mesh.meshType.pointComponentType, ri.wasmtime_lift(data_ptr, data_size)).reshape((-1, mesh.meshType.dimension)) else: mesh.points = _to_numpy_array(mesh.meshType.pointComponentType, bytes([])) @@ -377,7 +377,7 @@ class Pipeline: if polydata.numberOfPoints > 0: data_ptr = ri.get_output_array_address(0, index, 0) data_size = ri.get_output_array_size(0, index, 0) - polydata.points = _to_numpy_array(FloatTypes.Float32, ri.wasmtime_lift(data_ptr, data_size)) + polydata.points = _to_numpy_array(FloatTypes.Float32, ri.wasmtime_lift(data_ptr, data_size)).reshape((-1, 3)) else: polydata.points = _to_numpy_array(FloatTypes.Float32, bytes([])) diff --git a/packages/core/python/itkwasm/test/test_pipeline.py b/packages/core/python/itkwasm/test/test_pipeline.py index 666ed5ef..e83e548f 100644 --- a/packages/core/python/itkwasm/test/test_pipeline.py +++ b/packages/core/python/itkwasm/test/test_pipeline.py @@ -167,6 +167,9 @@ def test_pipeline_write_read_mesh(): outputs = pipeline.run(args, pipeline_outputs, pipeline_inputs) + print(outputs[0].data) + print(outputs[0].data.points.shape) + out_mesh_dict = asdict(outputs[0].data) # Native ITK Python binaries require uint64 out_mesh_dict['cells'] = out_mesh_dict['cells'].astype(np.uint64)
But the following needs to be addressed in itk Python:
itk
test/test_pipeline.py:177: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /home/matt/bin/micromamba/envs/itk-wasm/lib/python3.11/site-packages/itk/support/extras.py:828: in me sh_from_dict points = itk.vector_container_from_array(points) /home/matt/bin/micromamba/envs/itk-wasm/lib/python3.11/site-packages/itk/support/extras.py:561: in ve ctor_container_from_array return itk.PyVectorContainer[keys[0]].vector_container_from_array(arr) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ndarr = array([[3.71636 , 2.34339 , 0. ], [4.12656 , 0.642027, 0. ], [3.45497 , 2.16988 , 0. ], ...16 , 2.12093 , 1.17252 ], [4.13317 , 2.17523 , 1.25932 ], [4.23234 , 1.90308 , 0.534362]], dtype=float32) def vector_container_from_array(ndarr): """Get an itk.VectorContainer from a NumPy array. This is a deep copy of the NumPy array buffer and is completely safe without potential side effects. """ > assert ndarr.ndim == 1 , "Only arrays of 1 dimension are supported." E AssertionError: Only arrays of 1 dimension are supported.
The text was updated successfully, but these errors were encountered:
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WIP patch:
But the following needs to be addressed in
itk
Python:The text was updated successfully, but these errors were encountered: