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58 Open 86 Closed
58 Open 86 Closed
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Issues list

Unable to run pipeline – please provide test data bug Something isn't working
#358 opened Nov 15, 2024 by febedtu
Replace unmaintained Proteus with maxLFQ, by author's suggestion. enhancement New feature or request
#356 opened Nov 15, 2024 by vmkalbskopf
Importing Data into Chart Studio Cloud bug Something isn't working
#353 opened Nov 14, 2024 by Faitero
Add nf-core module DoRothEA to nf-core/differentialabundance enhancement New feature or request
#352 opened Nov 13, 2024 by atrigila
Add nf-core module PROGENy to nf-core/differentialabundance enhancement New feature or request
#351 opened Nov 13, 2024 by atrigila
Add module decoupleR to nf-core/modules enhancement New feature or request
#350 opened Nov 13, 2024 by atrigila
@atrigila
1
Add module DoRothEA to nf-core/modules enhancement New feature or request
#349 opened Nov 13, 2024 by atrigila
Gene name in differential and abundance tables enhancement New feature or request
#345 opened Nov 12, 2024 by oquendoM
Create 'differential' subworkflow enhancement New feature or request
#341 opened Nov 7, 2024 by pinin4fjords
@pinin4fjords
1
Volcano plot in report shows less genes than in 'plots/differential/*/png/volcano.png' bug Something isn't working
#340 opened Nov 7, 2024 by d4straub
@alanmmobbs93
9
Allow lfc_threshold to be a float enhancement New feature or request
#338 opened Nov 5, 2024 by vmkalbskopf
Mixed-model in Limma enhancement New feature or request
#325 opened Oct 28, 2024 by KamilMaliszArdigen
1
@KamilMaliszArdigen
4
add test data good first issue Good for newcomers
#321 opened Oct 25, 2024 by suzannejin
1 task
@nschcolnicov
1
Incorporation of IHW correction into the pipeline enhancement New feature or request
#319 opened Oct 24, 2024 by KamilMaliszArdigen
@KamilMaliszArdigen
update rmarkdown notebook
#317 opened Oct 23, 2024 by suzannejin
1 task
@ctuni
add plot_differential
#316 opened Oct 23, 2024 by suzannejin
1 task
add plot_exploratory
#315 opened Oct 23, 2024 by suzannejin
1 task
@suzannejin
handle compability between study type and analysis pathway good first issue Good for newcomers
#314 opened Oct 23, 2024 by suzannejin
1 task
better handling of ext.args vs toolsheet args
#313 opened Oct 23, 2024 by suzannejin
1 task
better intertalk between params and toolsheet good first issue Good for newcomers
#312 opened Oct 23, 2024 by suzannejin
4 tasks
add module GSEA good first issue Good for newcomers
#311 opened Oct 23, 2024 by suzannejin
1 task
1
@thomas-tams
1
Restructure the way how the 'experimental' branch is called by main
#309 opened Oct 23, 2024 by suzannejin
2 tasks
update documentation documentation Improvements or additions to documentation good first issue Good for newcomers
#307 opened Oct 22, 2024 by suzannejin
4 tasks
https://nf-co.re/differentialabundance/1.5.0/docs/usage/#g should be the full name:gprofiler2, not just g bug Something isn't working
#305 opened Oct 22, 2024 by vmkalbskopf
deseq_lfc_threshold parameter is not working as intended. bug Something isn't working
#295 opened Oct 7, 2024 by erdikucuk
ProTip! What’s not been updated in a month: updated:<2024-10-16.